Japan Bioinformatics
BioinformaticsSimbiot implements mapping to reference genomes retrieved from Ensembl using bowtie and tophat software. In both cases, the users can combine multiple samples into a single library, handle nucleotide, colorspace and various paired reads encoding. Results include BAM files as well as sorted SAM files that can be downloaded directly by the user. Mapping results can be displayed directly on the integrated genome browser more



Mapping Results
Quality Analysis: GC Content
Quality Analysis: Per Base Sequence Content
Quality Analysis: Per Base Sequence Quality
Genome browser plot of RNASeq junctions
Results of RNASeq splice junction mapping
Genome browser plot of RNASeq accepted hits