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Association Study

Simbiot provides functionality to perform GWAS on data generated using Affymetrix and Illumina SNP microarrays.  The analysis is implemented using Bioconductor (Gentleman, Carey et al. 2004) snpMatrix (Clayton and Leung 2007) library.

 

References

Clayton, D. and H. T. Leung (2007). “An R package for analysis of whole-genome association studies.” Hum Hered 64(1): 45-51.

Gentleman, R. C., V. J. Carey, et al. (2004). “Bioconductor: open software development for computational biology and bioinformatics.” Genome Biol 5(10): R80.

 

Selected screen shots

GWAS analysis plot
GWAS analysis grid