Simbiot: Individual AccountsLow cost, single-user
accounts support Affymetrix and Illumina cDNA and SNP microarrays. The
system currently provides up-to-date annotations, clustering, expression
analysis, time course analysis, genome-wide association studies, copy
number analysis, built-in genome browser and much more.
Simbiot integrates sophisticated algorithms, including SNP Copy Number Variations (CNV), SNP Genome Wide Association Studies (GWAS), cDNA Expression Analysis, cDNA Time Course Analysis, cDNA Clustering and PCA.
Try it by
registering for a free account on our demonstration server at http://www.simbiot.net.
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Expression Analysis:
Management and analysis of cDNA microarray data; cost and functionality
superior to popular stand-alone microarray analysis systems; built-in,
MIAME-compliant data model, annotation management, integrated genome
browser, collaboration, document management, social network services
(SNS) and more.
Integrated analytics include clustering (k-means, SOM, hierarchical), principal component analysis (PCA), sophisticated expression analysis and time course analysis algorithms, charting and visualization.
Databases include validated vendor annotations as well as gene cross-reference, gene ontology (GO), pathways and links to public data source such as Ensembl, Entrez, RefSeq and many more.
| Simbiot Expression
- Simbiot SDSで利用可能なRNA発現データ解析モジュール。
- 大容量のサンプルデータのデータマネージメント
- MIAME準拠
- クラスタリング解析、PCA解析、インターラクティブチャート、差分発現解析、タイムコース、他多数。
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SNP and Genomic Data Analysis:
Fully integrated with expression analysis service; additional
functionality to support SNP microarrays; integrates genome wide association study (GWAS),
linkage disequilibrium analysis (LD) and SNP-based copy number variations (CNV) analysis.
Additional built-in annotations includes complete dbSNP as well as links to Entrez, HapMap, DECIPHER, Genomic Variations and many other public repositories.
| Simbiot SNP
- Simbiot SDSで利用可能なSNPデータ解析モジュール。
- Simbiot Expressionにインテグレーションされ
- QTL解析に必要な基盤の提供。
- ゲノムブラウザー
- 関連解析、連鎖不平衡解析、コピーナンバー解析、他多数
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High Speed Sequencer Data Analysis:
Fully integrated with expression and SNP analysis service; supports RNA
Seq (de novo and reference genome), ChIP Seq, miRNA Seq and genomic
variations; easy transition from data processing to expression and time
course analysis as well as association studies; cloud-based setup
provides flexible pricing for data storage and archival.
| Simbiot HSS （High Speed Sequencer）開発中
HSSで計測される塩基配列の解析及び発現データの分析モジュールです。
Simbiot HSSは現在開発中です。現在までにシーケンサーの一部の解析サービスの提供
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